The navigation data of the Amundsen scientific expeditions between 2003 and 2019 were recorded with the Position and Orientation Systems for Marine Vessels (POS-MV) and C-Nav Differential Global Navigation Satellite System (DGNSS) Precise Point Positioning systems. Two sets of controlled data are provided for each year of expedition. The first set is at time intervals of seconds for every day of the cruise and the second set is at 15 minute intervals. The data consist of Latitude, Longitude, Heading, Roll, Pitch, Heave, Track, Speed and Global Positioning System (GPS) sources at the second time intervals. The vessel's tracks in .kml (Google Earth format) were derived from the 15 minute time intervals dataset and are also provided. Research programs participating in the Amundsen expeditions between 2003 and 2017 were CASES, ArcticNet, IPY-CFL, Solas, Geotraces, Malina, IOL and BP, Jamstec, Netcare, Weston, BREA, iBO and GreenEdge.

The data set is composed of raw files recorded with the Kongsberg Maritime SX90 long-range, low frequency (20-30 kHz) fisheries sonar during the CCGS Amundsen 2013 summer expedition in the Eastern Canadian Arctic. The sonar transducer is lowered 2.5 feet below the hull through a gate-valve. The cylindrical 256-elements transducer allows both a horizontal and a vertical sound transmission, and the omni-directional (horizontal) sonar beam can be tilted from +10 to -60 degrees to scan a large portion of the water column. The raw acoustic data were saved onto an external drive and print screens of interesting targets (fish schools) were recorded.

The CTD data was obtained during the 2007-2008 ArcticNet scientific cruise #0806. The data were collected from September 5 to 25, 2008, aboard the CCGS Amundsen. There were 83 casts, associated to 44 oceanographic stations, in the Baffin Bay area. The following parameters were measured: temperature, conductivity and pressure (with a Sea-Bird SBE-9plus), dissolved oxygen (Sea-Bird SBE-43), pH (Sea-Bird SBE-18-I), fluorescence (Seapoint chlorophyll fluorometer), nitrate concentration (Satlantic MBARI-ISUS 5T), transmittance (Wetlabs C-Star transmissometer), light intensity (PAR; Biospherical Instruments QCP2300) and surface light intensity (sPAR; Biospherical Instruments QCP2200). Quality control procedures were applied to the data. Data are available on the Polar Data Catalogue and at the Marine Environmental Data Service (MEDS) of Fisheries and Oceans Canada.

During the ArcticNet annual cruises of the research icebreaker CCGS Amundsen, characteristics of the near-surface atmosphere are monitored in conjunction with surface sea water properties to observe the relationship between the surface micro-climate and the air-sea exchange , with particular interest in CO2. Central to this integrated dataset is an eddy covariance system used to monitor fluxes of CO2, H2O, heat and momentum. The system continuously sampled the following variables at a rate of 10 Hz (instrument used to collect each variable is in parentheses, and approximate instrument height above surface is indicated): -3D wind velocity (Gill WindMaster Pro ultra-sonic anemometer) - 15m -Sonic air temperature (Gill WindMaster Pro ultra-sonic anemometer) - 15m -CO2 molar concentration (LI7500 open path gas analyzer) - 15m -H2O molar concentration (LI7500 open path gas analyzer) - 15m -CO2 mixing ratio (LI7000 integrated into a closed path system) - 15m -H2O mixing ratio (LI7000 integrated into a closed path system) - 15m -3D ship motion - angular rates and accelerations (MotionPak, Systron Donner) - 13m All instruments were mounted on a meteorological tower on the bow of the research icebreaker CCGS Amundsen.

Benthic fauna were sampled at 78 stations between June and October from 2007 to 2011 onboard the Canadian research icebreaker CCGS Amundsen. Station depths ranged from 34 to 1024 m, all below the average ice scouring zone. All faunal samples were collected with an Agassiz trawl (effective opening of 1.5 m and a 40 mm net mesh size, with a 5 mm cod end liner) with average trawling time and speed of 5 min and 1.5 knots, respectively.

Sample collections were made aboard the CCGS Amundsen during the ArcticNet field campaigns in August 2013 (Leg 1), July, August and October 2014 (Leg 1 & 3) and October 2015 (Leg 4). Sediment samples retrieved from box cores were sliced into 0.5 cm increments and frozen separately, while benthic invertebrates were collected using a benthic trawl. Individual species including Gorgoncephelus arcticus, Psilaster andromeda, Ophiopleura borealis and Ctenodiscus crispatus were identified, sorted, packed and stored at -30C and shipped to Winnipeg. At the University of Manitoba samples were freeze-dried and homogenized. Samples were then extracted and analyzed for polycyclic aromatic hydrocarbons (PAHs) and n-alkanes using a LECO Pegasus gas chromatographer with a high resolution time of flight mass spectrometer (GC-HR TOFMS). Supplementary data was also generated, including stable isotope ratios of nitrogen and carbon, as well as lipid (inverts) and total organic carbon (sediment) to calculate biota-sediment accumulation factors (BSAFs). Statistical analysis is currently ongoing.

During the ArcticNet annual cruises of the research icebreaker CCGS Amundsen, characteristics of the near-surface atmosphere are monitored in conjunction with surface sea water properties to observe the relationship between the surface micro-climate and the air-sea exchange, with particular interest in CO2. Central to this integrated dataset is an eddy covariance system used to monitor fluxes of CO2, H2O, heat and momentum. The system continuously sampled the following variables at a rate of 10 Hz (instrument used to collect each variable is in parentheses, and approximate instrument height above surface is indicated): 3D wind velocity (Gill WindMaster Pro and Campbell Scientific CSAT3 ultra-sonic anemometers) - 15m; sonic air temperature (3D ultra-sonic anemometers) - 15m; CO2 molar concentration (two LI7500A open path gas analyzers) - 15m; H2O molar concentration (two LI7500A open path gas analyzers) - 15m; CO2 mixing ratio (LI7000 closed path system) - 15m; H2O mixing ratio (LI7000 closed path system) - 15m; and 3D ship motion - angular rates and accelerations (MotionPak, Systron Donner) - 13m. All instruments were mounted on a meteorological tower on the bow of the research icebreaker CCGS Amundsen.

During the ArcticNet annual cruises of the research icebreaker CCGS Amundsen, characteristics of the surface sea water (temperature, salinity, dissolved CO2 and O2) are monitored in conjunction with properties of the near-surface atmosphere (basic meteorological elements, incident radiation, CO2 concentration) to observe the relationship between the surface microclimate and the air-sea exchange, with particular interest in CO2. Central to this integrated dataset is an under-way sea water pCO2 system (General Oceanics 8050) attached to the ship's clean water intake. The following variables were measured continuously and logged at 1 minute intervals: pCO2sw (LI7000 gas analyzer); equilibrator water temperature; conductivity; pH; and, dissolved O2.

The CCGS Amundsen is equipped with a RDI ADCP Ocean Surveyor (RDI os150), a ship-mounted current meter attached to the hull of the ship. The ship is also equipped of ice windows to protect the system while sailing through harsh arctic conditions. The current meter records continuous measures of the current along the ship transit route using a 150KHz sonar capable of covering the first 450m of the arctic water column. Since 2015 data are controlled using the Common Oceanographic Data Access System (CODAS, https://currents.soest.hawaii.edu/home/software/) of the University of Hawai'i, also adopted by the NOAA-National Centers for Environmental Information (NOAA-NCEI) to create the Joint Archive for Shipboard ADCP. Data are provided in NetCDF formats and follow the COARD (Cooperative Ocean/Atmosphere Research Data) convention. Detailed information and metadata are available in the documentation of the archive and in-built metadata files. Raw data since 2004 are available on demand.

During the ArcticNet annual cruises of the research icebreaker CCGS Amundsen, characteristics of the near-surface atmosphere (basic meteorological elements, incident radiation) are monitored. Central to this integrated dataset, the following meteorological variables were recorded at 1 minute intervals (instrument used to collect each variable is in parentheses, and approximate instrument height above surface is indicated): wind speed (RM Young Wind Monitor 05106-10) - 16m height; wind direction (RM Young Wind Monitor 05106-10) -16m height; air temperature (Vaisala HMP45C) - 15m height; relative humidity (Vaisala HMP45C) -15m height; and, surface temperature (Apogee IR Transducer SI-111) - 8m height, atmospheric pressure. All instruments were mounted on a meteorological tower on the bow of the research icebreaker CCGS Amundsen, except for the IR transducer SI-111, which was mounted on top of the gunwale at the ship's bow, overlooking the water surface.